PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00855.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 373aa    MW: 41557.6 Da    PI: 8.8734
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00855.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind85.47.8e-2787923103
                                   SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  23 engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                                     gn+fvv+d++e+a  +Lp++Fkh nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+k+ll++ikr++ +
  Zmw_sc00855.1.g00020.1.am.mk   8 GAGNAFVVWDPRELAAALLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFAHESFLAGQKHLLKNIKRRRPS 79 
                                   5789****************************************999.........*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.2E-28776IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-23876IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-26976IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-23976IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-82537IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402650IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-83850IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MRTLGVTGAG NAFVVWDPRE LAAALLPRFF KHANFASFVR QLNIYGFRKV NPDRWEFAHE  60
SFLAGQKHLL KNIKRRRPSK HYPDSQPRTG SSVCLGDDIR EVQSLKRDRA SLMAELAMLK  120
QRYSRCKSLL AAMEDRVRDN ERKQQLIVAF FAKVLTNPAF LQQQLNRLRN VELCGGAAKR  180
QRLMASEEQQ QYQQHVGAPV VENGVVEAAA ASAITEADVS ETGSSSDGGV AAVKHETMPE  240
WNGVQSFDNI CDDVWEELGA IPGTEVEQEV IAAASFDVEE FPGKPCGWVD DCPYLVDPMP  300
RAVTEFGTGL KLIRRPTRPN SLWIWIPNRH CILAHILLIA ASGLRPPPPP RLDGFFSPPR  360
RAIAAAGVLL RRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-1797942123Heat shock factor protein 1
5d5v_D5e-1797651129Heat shock factor protein 1
5d5v_B5e-1797651129Heat shock factor protein 1
5d5u_B5e-1797651129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975LKNIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982151.11e-112PREDICTED: heat stress transcription factor A-6a-like
SwissprotQ657C01e-110HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLK4ALG81e-112K4ALG8_SETIT; Uncharacterized protein
STRINGSi039749m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231